Below we have listed some pathogens of Citrus. You can observe some characteristics related to pathogens: isolation host, country of origin and symptoms. In the left column, under the heading “GBrowse”, for each isolate, were included to the application link to GBrowse, a useful tool for visualization and data processing. In the second column, the other hand, under the heading “NCBI accession no.”, there are links link to files of entire genomes on database “Nucleotide” from NCBI (National Center for Biotechnology Information).
Citrus tristeza virus (CTV)GBrowse | NCBI Accession no. | Isolation host | Country of origin | Symptoms |
VT | U56902 | Citrus sp. | Israel | |
NuaGA | AB046398 | Unknown | Japan | Seedling Yellow |
CT11A | JQ911664 | C. sinensis | China | |
T318A | DQ151548 | Unknown | Spain | |
AT-1 | JQ061137 | C. sinensis | China | |
FL202 | KC517493 | C. sinensis | Florida | |
FS2-2 | EU937519 | C. sinensis cv. Hamlin | Israel | |
FS701 | KC517494 | C. reticulata | Florida | |
FS703 | KC517492 | C. reticulata | Florida | |
L192GR | KC262793 | Lemon | Greece | |
Kpg3 | HM573451 | C. reticulata Blanco | India | |
SG29 | KC748392 | C. sinensis cv. Sanguinello | Italy | |
Mac39 | - | - | Italy | |
P3R1 | - | - | Italy | |
P3R3 | - | - | Italy | |
T30 | AF260651 | Unknown | Florida | |
FS701-T30 | KC517489 | C. reticulata | Florida | |
FL278 | KC517490 | C. paradisi | Florida | |
FS703-T30 | KC517491 | C. reticulata | Florida | |
Bau282 | KC748391 | C. sinensis cv.TDV | Italy | |
T385 | Y18420 | Unknown | Spain | |
Qaha | AY340974 | Unknown | Egypt | |
FS674 | KC517485 | C. sinensis | Florida | |
FS701-T36 | KC517486 | C. reticulata | Florida | |
FS703-T36 | KC517487 | C. reticulata | Florida | |
T36QD | CTU16304 | Unknown | Florida | Quick Decline |
CTV | DQ272579 | Unknown | Mexico | Stem pitting, Quick Decline |
T36 | U16304 | Unknown | Florida | Quick Decline |
FS577 | KC517488 | C. macrophylla | Florida | |
B301 | JF957196 | C. sinensis | Puertorico | |
NZRB-TH30 | FJ525434 | Poncirus trifoliata | New Zealand | |
NZRB-M17 | FJ525435 | C. aurantifolia | New Zealand | |
PUM/SP/T1 | JX266712 | C. grandis L. Osbeck | Taiwan | Stem pitting |
NZRB-G90 | FJ525432 | Poncirus trifoliata | New Zealand | |
NZRB-M12 | FJ525431 | Poncirus trifoliata | New Zealand | |
NZ-RB-TH28 | FJ525433 | Poncirus trifoliata | New Zealand | |
HA18-9 | GQ454869 | Unknown | Hawaii | |
B165 | EU076703 | C. reticulata cv. Ellendale | India | |
CT14A | JQ911663 | C. sinensis | China | |
T68-1 | JQ965169 | C. macrophylla | Florida | |
NZ-B18 | FJ525436 | C. sinensis | New Zealand | |
12-8 | KC333868 | Citrus aurantifolia; mexican lime | South Africa | |
T3 | KC525952 | C. macrophylla | Florida | |
NZ-M16 | EU857538 | C. aurantifolia | New Zealand | |
A18 | JQ798289 | C. reticulata | Thailand | Stem pitting |
SY568 | AF001623 | Unknown | California | Stem pitting |
PUM/M/T5 | JX266713 | C. grandis | Taiwan | |
HA16-5 | GQ454870 | C. latifolia | Hawaii |
Citrus viroids
GBrowse | NCBI Accession no. |
Citrus viroid-I-LSS | NC_004358 |
Citrus bent leaf viroid variant MC | AB054637 |
Citrus bent leaf viroid isolate CBLVd-3 | JQ080281 |
Citrus bent leaf viroid isolate CBLVd-2 | JQ080280 |
Citrus bent leaf viroid | NC_001651 |
Citrus dwarfing viroid isolate 961-7 | EU934032 |
Citrus dwarfing viroid isolate E822 | EU934031 |
citrus exocortis viroid CEV, CEV D-92 | S67442 |
Citrus exocortis viroid variant MA | AB054599 |
CEV Citrus exocortis viroid | J02053 |
Hop stunt viroid variant KS14 | AB211243 |
Hop stunt viroid variant EX1 | AB211242 |
Citrus viroid II isolate CVd II HN-03 | EU131156 |
Citrus viroid II isolate CVd II HN-02 | EU131155 |
Citrus viroid II isolate CVd II HN-01 | EU131154 |
Citrus viroid III isolate CVd III HN-03 | EU131159 |
Citrus viroid III isolate CVd III HN-02 | EU131158 |
Citrus viroid III isolate CVd III HN-01 | EU131157 |
Citrus viroid IV virus | NC_003539 |
Citrus Viroid IV (CVd IV) | X14638 |
Citrus viroid IV virus | NC_003539 |
Citrus viroid V | NC_010165 |
Citrus viroid V from Citrus limon | JQ072089 |